3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
4LSK|1|YA|U|2132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_318 not in the Motif Atlas
Homologous match to IL_5J7L_330
Geometric discrepancy: 0.3536
The information below is about IL_5J7L_330
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

4LSK|1|YA|C|2129
4LSK|1|YA|U|2130
4LSK|1|YA|G|2131
4LSK|1|YA|U|2132
4LSK|1|YA|G|2133
4LSK|1|YA|A|2134
4LSK|1|YA|A|2135
4LSK|1|YA|C|2136
*
4LSK|1|YA|G|2155
4LSK|1|YA|G|2156
4LSK|1|YA|G|2157
4LSK|1|YA|A|2158
4LSK|1|YA|G|2159

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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