3D structure

PDB id
4LT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
4LT8|1|XA|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LT8_213 not in the Motif Atlas
Homologous match to IL_4LFB_044
Geometric discrepancy: 0.0806
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_82453.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

4LT8|1|XA|U|1052
4LT8|1|XA|G|1053
4LT8|1|XA|C|1054
4LT8|1|XA|A|1055
4LT8|1|XA|U|1056
*
4LT8|1|XA|A|1204
4LT8|1|XA|U|1205
4LT8|1|XA|G|1206

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XJ
30S ribosomal protein S10
Chain XN
30S ribosomal protein S14
Chain XX
A-site ASL Pro
Chain XY
messenger RNA

Coloring options:


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