IL_4NVV_006

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4NVV|1|A|G|177
4NVV|1|A|G|178
4NVV|1|A|A|179
4NVV|1|A|A|180
4NVV|1|A|C|181
4NVV|1|A|U|182
4NVV|1|A|G|183
*
4NVV|1|A|C|190
4NVV|1|A|U|191
4NVV|1|A|C|192
4NVV|1|A|A|193
4NVV|1|A|G|194
4NVV|1|A|U|195
4NVV|1|A|A|196
4NVV|1|A|C|197

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S Ribosomal Protein L28

Chain 7

50S Ribosomal Protein L34

Chain 8

50S Ribosomal Protein L35

Chain P

50S Ribosomal Protein L15