IL_4NVV_020

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4NVV|1|A|G|848, 4NVV|1|A|G|852

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53635.5

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4NVV|1|A|G|721
4NVV|1|A|A|722
4NVV|1|A|A|723
4NVV|1|A|A|724
4NVV|1|A|C|725
*
4NVV|1|A|G|846
4NVV|1|A|A|847
4NVV|1|A|G|848
4NVV|1|A|A|849
4NVV|1|A|U|850
4NVV|1|A|A|851
4NVV|1|A|G|852
4NVV|1|A|C|853

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S Ribosomal Protein L4

Chain P

50S Ribosomal Protein L15