IL_4NVV_038

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4NVV|1|A|A|1202

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93424.6

Basepair signature

cWW-tSH-R-tHW-cWW

Number of instances in this motif group

26

Unit IDs

4NVV|1|A|C|1044
4NVV|1|A|U|1045
4NVV|1|A|A|1046
4NVV|1|A|A|1047
4NVV|1|A|G|1048
*
4NVV|1|A|C|1199
4NVV|1|A|G|1200
4NVV|1|A|A|1201
4NVV|1|A|A|1202
4NVV|1|A|G|1203

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L30

Chain B

5S Ribosomal RNA

Chain U

50S Ribosomal Protein L20

Chain V

50S Ribosomal Protein L21