IL_4NVV_077

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4NVV|1|A|A|1960, 4NVV|1|A|U|1966, 4NVV|1|A|U|1985

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15123.2

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

5

Unit IDs

4NVV|1|A|C|1956
4NVV|1|A|G|1957
4NVV|1|A|A|1958
4NVV|1|A|A|1959
4NVV|1|A|A|1960
4NVV|1|A|U|1961
4NVV|1|A|U|1962
4NVV|1|A|C|1963
4NVV|1|A|C|1964
4NVV|1|A|U|1965
4NVV|1|A|U|1966
4NVV|1|A|G|1967
*
4NVV|1|A|C|1983
4NVV|1|A|C|1984
4NVV|1|A|U|1985
4NVV|1|A|G|1986

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S Ribosomal Protein L2