IL_4NXM_034

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0607

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4NXM|1|A|C|779
4NXM|1|A|A|780
4NXM|1|A|A|781
4NXM|1|A|A|782
4NXM|1|A|C|783
*
4NXM|1|A|G|799
4NXM|1|A|G|800
4NXM|1|A|U|801
4NXM|1|A|A|802
4NXM|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11