IL_4NXM_059

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_059 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.1214

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4NXM|1|A|G|1401
4NXM|1|A|4OC|1402
4NXM|1|A|C|1403
4NXM|1|A|5MC|1404
4NXM|1|A|G|1405
*
4NXM|1|A|C|1496
4NXM|1|A|G|1497
4NXM|1|A|UR3|1498
4NXM|1|A|A|1499
4NXM|1|A|A|1500
4NXM|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains