IL_4NXM_062

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_062 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3534

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4NXM|1|A|G|1416
4NXM|1|A|G|1417
4NXM|1|A|A|1418
4NXM|1|A|G|1419
4NXM|1|A|C|1420
*
4NXM|1|A|G|1480
4NXM|1|A|U|1481
4NXM|1|A|G|1482
4NXM|1|A|A|1483
4NXM|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains