IL_4NXM_069

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4NXM|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_069 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2913

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4NXM|1|A|G|922
4NXM|1|A|A|923
4NXM|1|A|C|924
*
4NXM|1|A|G|1392
4NXM|1|A|U|1393
4NXM|1|A|A|1394
4NXM|1|A|C|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

ribosomal protein S5