IL_4NXN_048

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_048 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1074

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4NXN|1|A|G|1061
4NXN|1|A|U|1062
4NXN|1|A|C|1063
*
4NXN|1|A|G|1193
4NXN|1|A|U|1194
4NXN|1|A|C|1195

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain E

ribosomal protein S5

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14