3D structure

PDB id
4NXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
G(4OC)C(5MC)GU(5MC)AC*GAAGUCG(UR3)AAC
Length
20 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4NXN|1|A|G|1401
4NXN|1|A|4OC|1402
4NXN|1|A|C|1403
4NXN|1|A|5MC|1404
4NXN|1|A|G|1405
4NXN|1|A|U|1406
4NXN|1|A|5MC|1407
4NXN|1|A|A|1408
4NXN|1|A|C|1409
*
4NXN|1|A|G|1491
4NXN|1|A|A|1492
4NXN|1|A|A|1493
4NXN|1|A|G|1494
4NXN|1|A|U|1495
4NXN|1|A|C|1496
4NXN|1|A|G|1497
4NXN|1|A|UR3|1498
4NXN|1|A|A|1499
4NXN|1|A|A|1500
4NXN|1|A|C|1501

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
ribosomal protein S12

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1209 s