IL_4NXN_065

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAC*GUACA

Length

9 nucleotides

Bulged bases

4NXN|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXN_065 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3256

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4NXN|1|A|U|921
4NXN|1|A|G|922
4NXN|1|A|A|923
4NXN|1|A|C|924
*
4NXN|1|A|G|1392
4NXN|1|A|U|1393
4NXN|1|A|A|1394
4NXN|1|A|C|1395
4NXN|1|A|A|1396

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

ribosomal protein S5