IL_4NYD_001

3D structure

PDB id

4NYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGU*AAC*C

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NYD_001 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.3849

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

4NYD|1|A|G|18
4NYD|1|A|G|19
4NYD|1|A|U|20
*
4NYD|1|A|A|45
4NYD|1|A|A|47
4NYD|1|A|C|48
*
4NYD|1|A|C|48

Current chains

Chain A

thiM TPP riboswitch

Nearby chains