IL_4OQ9_001
3D structure
- PDB id
- 4OQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.45 Å
Loop
- Sequence
- AAA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AAA,UUU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4OQ9_001 not in the Motif Atlas
- Geometric match to IL_1Z7F_002
- Geometric discrepancy: 0.139
- The information below is about IL_1Z7F_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
4OQ9|1|X|A|161||A||P_1
4OQ9|1|X|A|162||A||P_1
4OQ9|1|X|A|163||A||P_1
*
4OQ9|1|m|U|187||A||P_1
4OQ9|1|m|U|188||A||P_1
4OQ9|1|m|U|189||A||P_1
Current chains
- Chain X
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain m
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Nearby chains
- Chain 2
- RNA (5'-R(P*UP*U)-3')
- Chain E
- Coat protein
- Chain F
- Coat protein
- Chain I
- Coat protein
- Chain K
- Coat protein
- Chain T
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain U
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain Y
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain Z
- RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Chain i
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
- Chain j
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
- Chain n
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
- Chain o
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
- Chain y
- RNA (5'-R(P*UP*U)-3')
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