IL_4P6F_097

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4P6F|1|RA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_097 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.1077

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4P6F|1|RA|G|1011
4P6F|1|RA|U|1012
4P6F|1|RA|C|1013
*
4P6F|1|RA|G|1149
4P6F|1|RA|C|1150

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20