IL_4P6F_127

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4P6F|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_127 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1306

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4P6F|1|RA|C|1686
4P6F|1|RA|G|1687
4P6F|1|RA|U|1688
4P6F|1|RA|A|1689
4P6F|1|RA|A|1690
4P6F|1|RA|C|1691
*
4P6F|1|RA|G|1696
4P6F|1|RA|G|1697
4P6F|1|RA|A|1698
4P6F|1|RA|G|1699
4P6F|1|RA|A|1700
4P6F|1|RA|A|1701
4P6F|1|RA|G|1702

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2