IL_4P6F_139

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4P6F|1|RA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_139 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.0922

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4P6F|1|RA|G|2067
4P6F|1|RA|U|2068
4P6F|1|RA|G|2069
*
4P6F|1|RA|C|2442
4P6F|1|RA|C|2443

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15

Chain Z7

T17-GLY-GLY-PRO-LYS-LYS-LYS-LYS-LYS-VAL-GLY-GLY