IL_4P6F_148

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_148 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0817

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4P6F|1|RA|C|2350
4P6F|1|RA|G|2351
4P6F|1|RA|A|2352
4P6F|1|RA|G|2353
*
4P6F|1|RA|C|2364
4P6F|1|RA|G|2365
4P6F|1|RA|A|2366
4P6F|1|RA|G|2367

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R8

50S ribosomal protein L35

Chain RS

50S ribosomal protein L18