IL_4P6F_191

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4P6F|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_191 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0991

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4P6F|1|XA|G|409
4P6F|1|XA|G|410
4P6F|1|XA|A|411
4P6F|1|XA|A|412
4P6F|1|XA|G|413
4P6F|1|XA|A|414
4P6F|1|XA|A|415
4P6F|1|XA|G|416
*
4P6F|1|XA|U|427
4P6F|1|XA|G|428
4P6F|1|XA|U|429
4P6F|1|XA|A|430
4P6F|1|XA|A|431
4P6F|1|XA|A|432
4P6F|1|XA|C|433

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XD

30S ribosomal protein S4