IL_4P6F_192

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_192 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1441

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4P6F|1|XA|G|446
4P6F|1|XA|G|447
4P6F|1|XA|A|448
4P6F|1|XA|C|449
4P6F|1|XA|G|450
*
4P6F|1|XA|C|483
4P6F|1|XA|G|484
4P6F|1|XA|G|485
4P6F|1|XA|U|486
4P6F|1|XA|A|487
4P6F|1|XA|C|488

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XP

30S ribosomal protein S16