3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4P6F_201 not in the Motif Atlas
Geometric match to IL_4LFB_027
Geometric discrepancy: 0.0986
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_74641.1
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
32

Unit IDs

4P6F|1|XA|G|654
4P6F|1|XA|A|655
*
4P6F|1|XA|U|751
4P6F|1|XA|G|752
4P6F|1|XA|A|753
4P6F|1|XA|C|754

Current chains

Chain XA
16S ribosomal RNA

Nearby chains

Chain XH
30S ribosomal protein S8
Chain XO
30S ribosomal protein S15

Coloring options:


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