IL_4P6F_235
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4P6F_235 not in the Motif Atlas
- Geometric match to IL_7RQB_001
- Geometric discrepancy: 0.0621
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4P6F|1|YA|G|24
4P6F|1|YA|U|25
4P6F|1|YA|G|26
4P6F|1|YA|G|27
4P6F|1|YA|A|28
4P6F|1|YA|U|29
4P6F|1|YA|G|30
*
4P6F|1|YA|C|510
4P6F|1|YA|U|511
4P6F|1|YA|G|512
4P6F|1|YA|A|513
4P6F|1|YA|A|514
4P6F|1|YA|A|515
4P6F|1|YA|C|516
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
Coloring options: