IL_4P6F_240
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4P6F_240 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0537
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4P6F|1|YA|G|188
4P6F|1|YA|G|189
4P6F|1|YA|A|190
4P6F|1|YA|A|191
4P6F|1|YA|C|192
4P6F|1|YA|U|193
4P6F|1|YA|G|194
*
4P6F|1|YA|C|201
4P6F|1|YA|U|202
4P6F|1|YA|C|203
4P6F|1|YA|A|204
4P6F|1|YA|G|205
4P6F|1|YA|U|206
4P6F|1|YA|A|207
4P6F|1|YA|C|208
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain Y7
- 50S ribosomal protein L34
- Chain Y8
- 50S ribosomal protein L35
- Chain YP
- 50S ribosomal protein L15
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