IL_4P6F_260

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4P6F|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_260 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.2862

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4P6F|1|YA|C|844
4P6F|1|YA|G|845
4P6F|1|YA|C|846
*
4P6F|1|YA|G|931
4P6F|1|YA|G|932
4P6F|1|YA|A|933
4P6F|1|YA|G|934

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y3

50S ribosomal protein L30