IL_4P6F_279
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUU*AAGUG
- Length
- 9 nucleotides
- Bulged bases
- 4P6F|1|YA|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4P6F_279 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.3365
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
4P6F|1|YA|C|1196
4P6F|1|YA|G|1197
4P6F|1|YA|U|1198
4P6F|1|YA|U|1199
*
4P6F|1|YA|A|1246
4P6F|1|YA|A|1247
4P6F|1|YA|G|1248
4P6F|1|YA|U|1249
4P6F|1|YA|G|1250
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YP
- 50S ribosomal protein L15
- Chain YU
- 50S ribosomal protein L20
Coloring options: