IL_4P6F_294

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_294 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0876

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4P6F|1|YA|A|1469
4P6F|1|YA|G|1470
4P6F|1|YA|A|1471
4P6F|1|YA|A|1472
4P6F|1|YA|G|1473
*
4P6F|1|YA|U|1520
4P6F|1|YA|G|1521
4P6F|1|YA|G|1522
4P6F|1|YA|U|1523

Current chains

Chain YA

23S ribosomal RNA

Nearby chains