IL_4P6F_295

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4P6F|1|YA|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_295 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5688

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

4P6F|1|YA|U|1482
4P6F|1|YA|G|1483
*
4P6F|1|YA|C|1506
4P6F|1|YA|A|1507
4P6F|1|YA|A|1508
4P6F|1|YA|C|1509
4P6F|1|YA|A|1510
4P6F|1|YA|A|1511
4P6F|1|YA|G|1512

Current chains

Chain YA

23S ribosomal RNA

Nearby chains