3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
4P6F|1|YA|G|1801, 4P6F|1|YA|G|1816, 4P6F|1|YA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4P6F_304 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0816
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4P6F|1|YA|U|1798
4P6F|1|YA|G|1799
4P6F|1|YA|C|1800
4P6F|1|YA|G|1801
4P6F|1|YA|A|1802
4P6F|1|YA|A|1803
4P6F|1|YA|C|1804
*
4P6F|1|YA|G|1813
4P6F|1|YA|G|1814
4P6F|1|YA|A|1815
4P6F|1|YA|G|1816
4P6F|1|YA|G|1817
4P6F|1|YA|U|1818
4P6F|1|YA|A|1819
4P6F|1|YA|U|1820
4P6F|1|YA|A|1821

Current chains

Chain YA
23S ribosomal RNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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