IL_4P6F_324

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4P6F|1|YA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_324 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.5661

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4P6F|1|YA|U|2401
4P6F|1|YA|C|2402
4P6F|1|YA|C|2403
*
4P6F|1|YA|G|2414
4P6F|1|YA|G|2415

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15