IL_4P6F_358

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

4P6F|1|XA|U|1125, 4P6F|1|XA|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4P6F|1|XA|G|1124
4P6F|1|XA|U|1125
4P6F|1|XA|U|1126
4P6F|1|XA|G|1127
4P6F|1|XA|C|1128
4P6F|1|XA|C|1129
4P6F|1|XA|A|1130
4P6F|1|XA|G|1131
4P6F|1|XA|C|1132
*
4P6F|1|XA|G|1142
4P6F|1|XA|G|1143
4P6F|1|XA|G|1144
4P6F|1|XA|C|1145
4P6F|1|XA|A|1146
4P6F|1|XA|C|1147
4P6F|1|XA|U|1148
4P6F|1|XA|C|1149

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10