IL_4P6F_361

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4P6F|1|YA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_361 not in the Motif Atlas

Homologous match to IL_9DFE_044

Geometric discrepancy: 0.0823

The information below is about IL_9DFE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4P6F|1|YA|C|1196
4P6F|1|YA|G|1197
4P6F|1|YA|U|1198
*
4P6F|1|YA|A|1247
4P6F|1|YA|G|1248
4P6F|1|YA|U|1249
4P6F|1|YA|G|1250

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15

Chain YU

50S ribosomal protein L20