IL_4P70_122

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4P70|1|RA|G|1801, 4P70|1|RA|G|1816, 4P70|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P70_122 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0854

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4P70|1|RA|U|1798
4P70|1|RA|G|1799
4P70|1|RA|C|1800
4P70|1|RA|G|1801
4P70|1|RA|A|1802
4P70|1|RA|A|1803
4P70|1|RA|C|1804
*
4P70|1|RA|G|1813
4P70|1|RA|G|1814
4P70|1|RA|A|1815
4P70|1|RA|G|1816
4P70|1|RA|G|1817
4P70|1|RA|U|1818
4P70|1|RA|A|1819
4P70|1|RA|U|1820
4P70|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2