IL_4P70_357

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P70_357 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.3424

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4P70|1|RA|C|2651
4P70|1|RA|C|2652
4P70|1|RA|U|2653
4P70|1|RA|A|2654
4P70|1|RA|G|2655
4P70|1|RA|U|2656
4P70|1|RA|A|2657
4P70|1|RA|C|2658
*
4P70|1|RA|G|2663
4P70|1|RA|G|2664
4P70|1|RA|A|2665
4P70|1|RA|C|2666
4P70|1|RA|C|2667
4P70|1|RA|G|2668
4P70|1|RA|G|2669

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6