IL_4P8Z_004

3D structure

PDB id

4P8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GCACGGCCCUG*UGUGUCCAAUGAAC

Length

25 nucleotides

Bulged bases

4P8Z|1|A|A|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4P8Z|1|A|G|115
4P8Z|1|A|C|116
4P8Z|1|A|A|117
4P8Z|1|A|C|118
4P8Z|1|A|G|119
4P8Z|1|A|G|120
4P8Z|1|A|C|121
4P8Z|1|A|C|122
4P8Z|1|A|C|123
4P8Z|1|A|U|124
4P8Z|1|A|G|125
*
4P8Z|1|A|U|135
4P8Z|1|A|G|136
4P8Z|1|A|U|137
4P8Z|1|A|G|138
4P8Z|1|A|U|139
4P8Z|1|A|C|140
4P8Z|1|A|C|141
4P8Z|1|A|A|142
4P8Z|1|A|A|143
4P8Z|1|A|U|144
4P8Z|1|A|G|145
4P8Z|1|A|A|146
4P8Z|1|A|A|147
4P8Z|1|A|C|148

Current chains

Chain A

Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1

Nearby chains