IL_4P95_003

3D structure

PDB id

4P95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme)

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUGG*CGUAACAUC

Length

13 nucleotides

Bulged bases

4P95|1|A|C|309, 4P95|1|A|U|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63750.1

Basepair signature

cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4P95|1|A|G|290
4P95|1|A|U|291
4P95|1|A|G|292
4P95|1|A|G|293
*
4P95|1|A|C|304
4P95|1|A|G|305
4P95|1|A|U|306
4P95|1|A|A|307
4P95|1|A|A|308
4P95|1|A|C|309
4P95|1|A|A|310
4P95|1|A|U|311
4P95|1|A|C|312

Current chains

Chain A

RNA (192-MER)

Nearby chains