IL_4PDB_002

3D structure

PDB id

4PDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AU*AUAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4PDB|1|I|A|14
4PDB|1|I|U|15
*
4PDB|1|I|A|24
4PDB|1|I|U|25
4PDB|1|I|A|26
4PDB|1|I|U|27

Current chains

Chain I

SELEX RNA aptamer

Nearby chains

Chain A

30S ribosomal protein S8