IL_4PMI_008

3D structure

PDB id

4PMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Rev and Rev-response-element RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

4PMI|1|A|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4PMI|1|A|G|46
4PMI|1|A|G|47
4PMI|1|A|G|48
4PMI|1|A|C|49
*
4PMI|1|A|G|70
4PMI|1|A|G|71
4PMI|1|A|U|72
4PMI|1|A|A|73
4PMI|1|A|C|74

Current chains

Chain A

Rev-Response-Element RNA

Nearby chains

Chain B

Protein Rev

Chain C

Protein Rev