IL_4PR6_001

3D structure

PDB id

4PR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A Second Look at the HDV Ribozyme Structure and Dynamics.

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15218.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4PR6|1|B|C|107
4PR6|1|B|A|108
4PR6|1|B|U|109
4PR6|1|B|G|110
4PR6|1|B|G|111
4PR6|1|B|U|112
4PR6|1|B|C|113
4PR6|1|B|C|114
4PR6|1|B|C|115
4PR6|1|B|A|116
4PR6|1|B|G|117
*
4PR6|1|B|C|130
4PR6|1|B|G|131

Current chains

Chain B

HDV RIBOZYME SELF-CLEAVED

Nearby chains