IL_4PRF_001

3D structure

PDB id

4PRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A Second Look at the HDV Ribozyme Structure and Dynamics.

Experimental method

X-RAY DIFFRACTION

Resolution

2.39 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09572.1

Basepair signature

cWW-L-L-L-L-L-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4PRF|1|B|C|107
4PRF|1|B|A|108
4PRF|1|B|U|109
4PRF|1|B|G|110
4PRF|1|B|G|111
4PRF|1|B|U|112
4PRF|1|B|C|113
4PRF|1|B|C|114
4PRF|1|B|C|115
4PRF|1|B|A|116||A
4PRF|1|B|G|117
*
4PRF|1|B|C|130
4PRF|1|B|G|131

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains