IL_4PWD_008

3D structure

PDB id

4PWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

TT*AAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75289.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4PWD|1|P|DT|812
4PWD|1|P|DT|813
*
4PWD|1|T|A|715
4PWD|1|T|A|715|||A
4PWD|1|T|A|716

Current chains

Chain P

5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3'

Chain T

5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*U)-3'

Nearby chains

Chain A

HIV-1 Reverse Transcriptase, P66 subunit

Chain B

HIV-1 Reverse Transcriptase, P51 subunit