IL_4Q0B_003

3D structure

PDB id

4Q0B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 reverse transcriptase in complex with gap-RNA/DNA and Nevirapine

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GTC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Q0B|1|P|DG|805
4Q0B|1|P|DT|806
4Q0B|1|P|DC|807
*
4Q0B|1|t|G|6
4Q0B|1|t|A|7
4Q0B|1|t|C|8

Current chains

Chain P

5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3'

Chain t

5'-R(P*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*UP*G)-3'

Nearby chains

Chain A

HIV-1 reverse transcriptase, p66 subunit

Chain B

HIV-1 reverse transcriptase, p51 subunit