IL_4TUC_126

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4TUC|1|RA|G|1801, 4TUC|1|RA|G|1816, 4TUC|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUC_126 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0673

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4TUC|1|RA|U|1798
4TUC|1|RA|G|1799
4TUC|1|RA|C|1800
4TUC|1|RA|G|1801
4TUC|1|RA|A|1802
4TUC|1|RA|A|1803
4TUC|1|RA|C|1804
*
4TUC|1|RA|G|1813
4TUC|1|RA|G|1814
4TUC|1|RA|A|1815
4TUC|1|RA|G|1816
4TUC|1|RA|G|1817
4TUC|1|RA|U|1818
4TUC|1|RA|A|1819
4TUC|1|RA|U|1820
4TUC|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2