IL_4TUD_083

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_083 not in the Motif Atlas

Geometric match to IL_4QIK_001

Geometric discrepancy: 0.3832

The information below is about IL_4QIK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4TUD|1|RA|G|836
4TUD|1|RA|C|837
4TUD|1|RA|C|838
*
4TUD|1|RA|G|940
4TUD|1|RA|A|941
4TUD|1|RA|G|942
4TUD|1|RA|U|943

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15