IL_4TUD_120

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_120 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0635

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4TUD|1|RA|G|1651
4TUD|1|RA|A|1652
4TUD|1|RA|G|1653
4TUD|1|RA|A|1654
4TUD|1|RA|A|1655
4TUD|1|RA|C|1656
*
4TUD|1|RA|G|2004
4TUD|1|RA|A|2005
4TUD|1|RA|C|2006

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17