IL_4TUD_227

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_227 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.088

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4TUD|1|XA|G|1416
4TUD|1|XA|G|1417
4TUD|1|XA|A|1418
4TUD|1|XA|G|1419
*
4TUD|1|XA|U|1481
4TUD|1|XA|G|1482
4TUD|1|XA|A|1483
4TUD|1|XA|C|1484

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain YA

Large subunit ribosomal RNA; LSU rRNA