IL_4TUD_296

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_296 not in the Motif Atlas

Geometric match to IL_5J7L_306

Geometric discrepancy: 0.0613

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4TUD|1|YA|G|1666
4TUD|1|YA|G|1667
4TUD|1|YA|A|1668
4TUD|1|YA|A|1669
*
4TUD|1|YA|U|1993
4TUD|1|YA|C|1994

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14