IL_4TUD_346

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUD_346 not in the Motif Atlas

Geometric match to IL_8C3A_059

Geometric discrepancy: 0.317

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4TUD|1|QA|C|656
4TUD|1|QA|G|657
4TUD|1|QA|G|658
*
4TUD|1|QA|C|747
4TUD|1|QA|C|748
4TUD|1|QA|C|749
4TUD|1|QA|G|750

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QO

30S ribosomal protein S15