IL_4TUE_066

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_066 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0655

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4TUE|1|RA|U|239
4TUE|1|RA|G|240
4TUE|1|RA|A|241
4TUE|1|RA|G|242
4TUE|1|RA|U|243
4TUE|1|RA|A|244
4TUE|1|RA|G|245
*
4TUE|1|RA|C|253
4TUE|1|RA|G|254
4TUE|1|RA|A|255
4TUE|1|RA|A|256
4TUE|1|RA|A|257
4TUE|1|RA|G|258

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15