IL_4TUE_215

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4TUE|1|XA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUE_215 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.3221

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4TUE|1|XA|G|1124
4TUE|1|XA|U|1125
4TUE|1|XA|U|1126
4TUE|1|XA|G|1127
4TUE|1|XA|C|1128
*
4TUE|1|XA|G|1143
4TUE|1|XA|G|1144
4TUE|1|XA|C|1145
4TUE|1|XA|A|1146
4TUE|1|XA|C|1147
4TUE|1|XA|U|1148
4TUE|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10